Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.įitASfunc 3. Untracked: output/Kinship_D_NRCRI_2020Oct15.rds Untracked: output/Kinship_D_NRCRI_2020April27.rds Untracked: output/Kinship_DD_NRCRI_2020April27.rds Untracked: output/Kinship_A_NRCRI_2020Oct15.rds Untracked: output/Kinship_A_NRCRI_2020April27.rds The predictions from the model are on the logit scale and they do not include the. Untracked: output/Kinship_AD_NRCRI_2020Oct15.rds The following are a few lines from the prediction file of ASReml (.sln). Untracked: output/Kinship_AD_NRCRI_2020April27.rds Untracked: output/Kinship_AA_NRCRI_2020April27.rds Untracked: data/chr1_RefPanelAndGSprogeny_ReadyForGP_72719.fam Untracked: data/DatabaseDownload_2020Oct13/ Untracked: CrossValidationFunction_PlusNRCRI_2020GSnotes.gslides For models with row column or resolvable row column design, SpATS is the default engine, for the other models lme4. In statgenSTA models can be fitted using SpATS (Rodríguez-Álvarez et al. Below is the status of the Git repository when the results were generated: To do this, for each trial a model can be fitted for the trait we are interested in. workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). See the Past versions tab to see a history of the changes made to the R Markdown and HTML files. The results in this page were generated with repository version c5c0337. Therefore, this study aims to develop an R package named AFEchidna based on Echidna software. Although there is free software such as Echidna or the R package sommer, the Echidna syntax is complex and the R package functionality is limited. Tracking code development and connecting the code version to the results is critical for reproducibility. The current pioneer software for genetic assessment is ASReml, but it is commercial and expensive. Great! You are using Git for version control.

Predictions asreml